SNP Profiles of BE 10   View Data

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 Key

 1234567891011121314
_Input profile
AAAATTAAGGGGCCCCCCCCGGTTCCTT
1._GC-08-090-2-13
AAAATTAAGGGGCCCCCCCCGGTTCCTT
2._GC-08-090-2-13
AAAATTAAGGGGCCCCCCCCGGTTCCTT
3._GC-08-090-2-13
AAAATTAAGGGGCCCCCCCCGGTTCCTT
4._GC-08-090-2-13
AAAATTAAGGGGCCCCCCCCGGTTCCTT
5._GC-08-090-2-13
AAAATTAAGGGGCCCCCCCCGGTTCCTT
6._GC-08-090-2-13
AAAATTAAGGGGCCCCCCCCGGTTCCTT
7._GC-08-090-2-13
AAAATTAAGGGGCCCCCCCCGGTTCCTT
8._GC-08-090-2-13
AAAATTAAGGGGCCCCCCCCGGTTCCTT
9._GC-08-090-2-13
AAAATTAAGGGGCCCCCCCCGGTTCCTT
10._GC-08-090-2-13
AAAATTAAGGGGCCCCCCCCGGTTCCTT
11._GC-08-090-2-13
AAAATTAAGGGGCCCCCCCCGGTTCCTT
12._BE_10
AAAATTAA____CCCCGG_CC_
13._BE_10
AAAATTAA____CCCCGG_CC_
14._BE_10
AAAATTAA____CCCCGG_CC_
15._BE_10
AAAATTAA____CCCCGG_CC_
16._BE_10
AAAATTAA____CCCCGG_CC_
17._BE_10
AAAATTAA____CCCCGG_CC_
18._BE_10
AAAATTAA____CCCCGG_CC_
19._BE_10
AAAATTAA____CCCCGG_CC_
20._BE_10
AAAATTAA____CCCCGG_CC_
21._BE_10
AAAATTAA____CCCCGG_CC_
22._BE_10
AAAATTAA____CCCCGG_CC_
23._BE_10
AAAATTAA____CCCCGG_CC_
24._BE_10
AA_TTAA____CCCCGG_CC_
25._GC-08-90-2-13
AAAA_AAGGGG_GGGG_GGAAGGAA
 1516171819202122232425262728
_Input profile
AACCAAGGCCGGTTAATTGGTTAACCGG
1._GC-08-090-2-13
AACCAAGGCCGGTTAATTGGTTAACCGG
2._GC-08-090-2-13
AACCAAGGCCGGTTAATTGGTTAACCGG
3._GC-08-090-2-13
AACCAAGGCCGGTTAATTGGTTAACCGG
4._GC-08-090-2-13
AACCAAGGCCGGTTAATTGGTTAACCGG
5._GC-08-090-2-13
AACCAAGGCCGGTTAATTGGTTAACCGG
6._GC-08-090-2-13
AACCAAGGCCGGTTAATTGGTTAACCGG
7._GC-08-090-2-13
AACCAAGGCCGGTTAATTGGTTAACCGG
8._GC-08-090-2-13
AACCAAGGCCGGTTAATTGGTTAACCGG
9._GC-08-090-2-13
AACCAAGGCCGGTTAATTGGTTAACCGG
10._GC-08-090-2-13
AACCAAGGCCGGTTAATTGGTTAACCGG
11._GC-08-090-2-13
AACCAAGGCCGGTTAATTGGTTAACCGG
12._BE_10
__AA__GG____TTAA_GG
13._BE_10
__AA__GG____TTAA_GG
14._BE_10
__AA__GG____TTAA_GG
15._BE_10
__AA__GG____TTAA_GG
16._BE_10
__AA__GG____TTAA_GG
17._BE_10
__AA__GG____TTAA_GG
18._BE_10
__AA__GG____TTAA_GG
19._BE_10
__AA__GG____TTAA_GG
20._BE_10
__AA__GG____TTAA_GG
21._BE_10
__AA__GG____TTAA_GG
22._BE_10
__AA__GG____TTAA_GG
23._BE_10
__AA__GG____TTAA_GG
24._BE_10
__AA_______TTAA_GG
25._GC-08-90-2-13
TTCCAACC_GGAAGGAAGGTTAAGGCC
 2930313233343536373839404142
_Input profile
AATTGGGGCCCCGGTTGGTTAATTAACC
1._GC-08-090-2-13
AATTGGGGCCCCGGTTGGTTAATTAACC
2._GC-08-090-2-13
AATTGGGGCCCCGGTTGGTTAATTAACC
3._GC-08-090-2-13
AATTGGGGCCCCGGTTGGTTAATTAACC
4._GC-08-090-2-13
AATTGGGGCCCCGGTTGGTTAATTAACC
5._GC-08-090-2-13
AATTGGGGCCCCGGTTGGTTAATTAACC
6._GC-08-090-2-13
AATTGGGGCCCCGGTTGGTTAATTAACC
7._GC-08-090-2-13
AATTGGGGCCCCGGTTGGTTAATTAACC
8._GC-08-090-2-13
AATTGGGGCCCCGGTTGGTTAATTAACC
9._GC-08-090-2-13
AATTGGGGCCCCGGTTGGTTAATTAACC
10._GC-08-090-2-13
AATTGGGGCCCCGGTTGGTTAATTAACC
11._GC-08-090-2-13
AATTGGGGCCCCGGTTGGTTAATTAACC
12._BE_10
AA___CC_GGTT__AA___
13._BE_10
AA___CC_GGTT__AA___
14._BE_10
AA___CC_GGTT__AA___
15._BE_10
AA___CC_GGTT__AA___
16._BE_10
AA___CC_GGTT__AA___
17._BE_10
AA___CC_GGTT__AA___
18._BE_10
AA___CC_GGTT__AA___
19._BE_10
AA___CC_GGTT__AA___
20._BE_10
AA___CC_GGTT__AA___
21._BE_10
AA___CC_GGTT__AA___
22._BE_10
AA___CC_GGTT__AA___
23._BE_10
AA___CC_GGTT__AA___
24._BE_10
AA___CC_GGTT__AA___
25._GC-08-90-2-13
AAAACCGGCCCCGGAACCAAAAAAAAGG
 4344454647484950515253545556
_Input profile
GGTTCCAAGGAACCCCGGGGTTTTCCTT
1._GC-08-090-2-13
GGTTCCAAGGAACCCCGGGGTTTTCCTT
2._GC-08-090-2-13
GGTTCCAAGGAACCCCGGGGTTTTCCTT
3._GC-08-090-2-13
GGTTCCAAGGAACCCCGGGGTTTTCCTT
4._GC-08-090-2-13
GGTTCCAAGGAACCCCGGGGTTTTCCTT
5._GC-08-090-2-13
GGTTCCAAGGAACCCCGGGGTTTTCCTT
6._GC-08-090-2-13
GGTTCCAAGGAACCCCGGGGTTTTCCTT
7._GC-08-090-2-13
GGTTCCAAGGAACCCCGGGGTTTTCCTT
8._GC-08-090-2-13
GGTTCCAAGGAACCCCGGGGTTTTCCTT
9._GC-08-090-2-13
GGTTCCAAGG_CCCCGGGGTTTTCCTT
10._GC-08-090-2-13
GGTTCCAAGGAACCCCGGGGTTTTCCTT
11._GC-08-090-2-13
GGTTCC_GGAACCCCGGGGTTTT_TT
12._BE_10
__CC_________CCTT
13._BE_10
__CC_________CCTT
14._BE_10
__CC_________CCTT
15._BE_10
__CC_________CCTT
16._BE_10
__CC_________CCTT
17._BE_10
__CC_________CCTT
18._BE_10
__CC_________CCTT
19._BE_10
__CC_________CCTT
20._BE_10
__CC_________CCTT
21._BE_10
__CC_________CCTT
22._BE_10
__CC_________CCTT
23._BE_10
__CC__________TT
24._BE_10
__CC_________CCTT
25._GC-08-90-2-13
CC_GG_GGAAGG_GGGGAAAAGGAA
 5758596061626364656667686970
_Input profile
TTAACCTTCCAAGGGGCCAATTGGGGTT
1._GC-08-090-2-13
TTAACCTTCCAAGGGGCCAATTGGGGTT
2._GC-08-090-2-13
TTAACCTTCCAAGGGGCCAATTGGGGTT
3._GC-08-090-2-13
TTAACCTTCCAAGGGGCCAATTGGGGTT
4._GC-08-090-2-13
TTAACCTTCCAAGGGGCCAATTGGGGTT
5._GC-08-090-2-13
TTAACCTTCCAAGGGGCCAATTGGGGTT
6._GC-08-090-2-13
TTAACCTTCCAAGGGGCCAATTGGGGTT
7._GC-08-090-2-13
TTAACCTTCCAAGGGGCCAATTGGGGTT
8._GC-08-090-2-13
TTAACCTTCCAAGGGGCCAATTGGGGTT
9._GC-08-090-2-13
TTAACCTTCCAAGGGGCCAATTGGGGTT
10._GC-08-090-2-13
TTAACCTTCCAAGGGGCCAATTGGGGTT
11._GC-08-090-2-13
TTAACCTTCCAAGGGGCCAATTGGGGTT
12._BE_10
__CC_CCAAGG_CCAATTGG__
13._BE_10
__CC_CCAAGG_CCAATTGG__
14._BE_10
__CC_CCAAGG_CCAATTGG__
15._BE_10
__CC_CCAAGG_CCAATTGG__
16._BE_10
__CC_CCAAGG_CCAATTGG__
17._BE_10
__CC_CCAAGG_CCAATTGG__
18._BE_10
__CC_CCAAGG_CCAATTGG__
19._BE_10
__CC_CCAAGG_CCAATTGG__
20._BE_10
__CC_CCAAGG_CCAATTGG__
21._BE_10
__CC_CCAAGG_CCAATTGG__
22._BE_10
__CC_CCAAGG_CCAATTGG__
23._BE_10
__CC_CCAAGG_CCAATTGG__
24._BE_10
__CC_CCAAGG_CCAATTGG__
25._GC-08-90-2-13
AAAAGGAAGGAAGGGGCCAAAACCGG_
 7172737475767778798081828384
_Input profile
CCGGTTCCAACCAAAACCGGCCTTAATT
1._GC-08-090-2-13
CCGGTTCCAACCAAAACCGGCCTTAATT
2._GC-08-090-2-13
CCGGTTCCAACCAAAACCGGCCTTAATT
3._GC-08-090-2-13
CCGGTTCCAACCAAAACCGGCCTTAATT
4._GC-08-090-2-13
CCGGTTCCAACCAAAACCGGCCTTAATT
5._GC-08-090-2-13
CCGGTTCCAACCAAAACCGGCCTTAATT
6._GC-08-090-2-13
CCGGTTCCAACCAAAACCGGCCTTAATT
7._GC-08-090-2-13
CCGGTTCCAACCAAAACCGGCCTTAATT
8._GC-08-090-2-13
CCGGTTCCAACCAAAACCGGCCTTAATT
9._GC-08-090-2-13
CCGGTTCCAACCAAAACCGGCCTTAATT
10._GC-08-090-2-13
CCGGTTCCAACCAAAACCGGCCTTAATT
11._GC-08-090-2-13
CCGG_CCAACCAAAACCGGCCTTAATT
12._BE_10
_GGTT_____CCGG___TT
13._BE_10
_GGTT_____CCGG___TT
14._BE_10
_GGTT_____CCGG___TT
15._BE_10
_GGTT_____CCGG___TT
16._BE_10
_GGTT_____CCGG___TT
17._BE_10
_GGTT_____CCGG___TT
18._BE_10
_GGTT_____CCGG___TT
19._BE_10
_GGTT_____CCGG___TT
20._BE_10
_GGTT_____CCGG___TT
21._BE_10
_GGTT_____CCGG___TT
22._BE_10
_GGTT_____CCGG___TT
23._BE_10
_GG______CCGG___TT
24._BE_10
_AA_______GG___TT
25._GC-08-90-2-13
__AACCAACCAA_CCCCGGTTAAAA
 85868788899091929394    
_Input profile
TTTTTTAATTCCTTTTAAGGX_XX_XX_XX_X
1._GC-08-090-2-13
TTTTTTAATTCCTTTTAAGGX_XX_XX_XX_X
2._GC-08-090-2-13
TTTTTTAATTCCTTTTAAGGX_XX_XX_XX_X
3._GC-08-090-2-13
TTTTTTAATTCCTTTTAAGGX_XX_XX_XX_X
4._GC-08-090-2-13
TTTTTTAATTCCTTTTAAGGX_XX_XX_XX_X
5._GC-08-090-2-13
TTTTTTAATTCCTTTTAAGGX_XX_XX_XX_X
6._GC-08-090-2-13
TTTTTTAATTCCTTTTAAGGX_XX_XX_XX_X
7._GC-08-090-2-13
TTTTTTAATTCCTTTTAAGGX_XX_XX_XX_X
8._GC-08-090-2-13
TTTTTTAATTCCTTTTAAGGX_XX_XX_XX_X
9._GC-08-090-2-13
TTTTTTAATTCCTTTTAAGGX_XX_XX_XX_X
10._GC-08-090-2-13
TTTTTTAATTCC_TTAAGGX_XX_XX_XX_X
11._GC-08-090-2-13
TTTTTTAATTCCTTTTAAGGX_XX_XX_XX_X
12._BE_10
TTTT_AA_CCTTTT__X_XX_XX_XX_X
13._BE_10
TTTT_AA_CCTTTT__X_XX_XX_XX_X
14._BE_10
TTTT_AA_CCTTTT__X_XX_XX_XX_X
15._BE_10
TTTT_AA_CCTTTT__X_XX_XX_XX_X
16._BE_10
TTTT_AA_CCTTTT__X_XX_XX_XX_X
17._BE_10
TTTT_AA_CCTTTT__X_XX_XX_XX_X
18._BE_10
TTTT_AA_CCTTTT__X_XX_XX_XX_X
19._BE_10
TTTT_AA_CCTTTT__X_XX_XX_XX_X
20._BE_10
TTTT_AA_CCTTTT__X_XX_XX_XX_X
21._BE_10
TTTT_AA_CCTTTT__X_XX_XX_XX_X
22._BE_10
TTTT_AA_CC_TT__X_XX_XX_XX_X
23._BE_10
TTTT_AA_CCTTTT__X_XX_XX_XX_X
24._BE_10
TTTT_AA__TT___X_XX_XX_XX_X
25._GC-08-90-2-13
AA_AA__GGAAAATTGGX_XX_XX_XX_X

Input profile: BE_10 GC-08-090-2-13

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

1._BE_10 GC-08-090-2-13

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

2._BE_10 GC-08-090-2-13

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

3._BE_10 GC-08-090-2-13

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

4._BE_10 GC-08-090-2-13

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

5._BE_10 GC-08-090-2-13

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

6._BE_10 GC-08-090-2-13

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

7._BE_10 GC-08-090-2-13

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

8._BE_10 GC-08-090-2-13

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

9._BE_10 GC-08-090-2-13

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

10._BE_10 GC-08-090-2-13

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

11._BE_10 GC-08-090-2-13

identical
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

12._BE_10

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 6
 Dapeng Zhang, 2016

13._BE_10

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 5
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

14._BE_10

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 7
 Dapeng Zhang, 2016

15._BE_10

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 8
 Dapeng Zhang, 2016

16._BE_10

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 9
 Dapeng Zhang, 2016

17._BE_10

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 11
 Dapeng Zhang, 2016

18._BE_10

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 13
 Dapeng Zhang, 2016

19._BE_10

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 14
 Dapeng Zhang, 2016

20._BE_10

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 1 > FP
 Dapeng Zhang, 2016

21._BE_10

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 4 > FP
 Dapeng Zhang, 2016

22._BE_10

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 2 > FP
 Dapeng Zhang, 2016

23._BE_10

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 3 > FP
 Dapeng Zhang, 2016

24._BE_10

97.1 %
34 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5A N3/467 T1
 Dapeng Zhang, 2016

25._BE_10 GC-08-90-2-13

47.5 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: Nursery, Block: -, Rep: -, Tree: 5
Notes: MCCS_Structure_refs_above_0.9membership - Sample
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP1309 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP193 63TcSNP25 64TcSNP364 65TcSNP144
66TcSNP230 67TcSNP560 68TcSNP723 69TcSNP731 70TcSNP701
71TcSNP1041 72TcSNP645 73TcSNP917 74Tcm003s01336581 75Tcm003s07402719
76Tcm001s00947643 77Tcm006s26664133 78Tcm002s20575712 79TcSNP529 80TcSNP1458
81TcSNP60 82TcSNP430 83TcSNP823 84TcSNP619 85TcSNP994
86TcSNP1144 87TcSNP1156 88TcSNP469 89TcSNP999 90TcSNP242
91TcSNP1253 92TcSNP1414 93TcSNP154 94TcSNP240